PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g03000.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 633aa    MW: 67626.9 Da    PI: 6.6549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g03000.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48e-16385431455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Zjn_sc00005.1.g03000.1.sm.mkhc 385 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 431
                                     5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.80E-17378435No hitNo description
SuperFamilySSF474591.96E-20379440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981381430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-13385431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20385439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MHACAPPVHG CRSDGNDFAE LLWENGQAVV HGRRKQPLTA FPPFTCGGAS SSKAQEKHPG  60
SDPVALLKTT GVYGAGTMAP SAHDLYSGLD TSRGNGDLDD TVPWIHYPII EDDDEGAAPA  120
LADSYSPDFF SELQAAAAVA VNLTPPPPSV QHTADNRSAG AATMAGEPEP SKESRRISVS  180
APRPEPQAEF KANKQPRLGG GGDALMNFSL FSRPAAMARA SLQQSAQRPP PPLGTDKPPG  240
VTVTSSTRVE STVVQSSSGP RTAPVHTDQR MAWPQAKEVR FACTAAPTSM AAGIMQQELP  300
RDRIANDMAP QRRVEAKKVP EAAIAASSVC SGNGAGIGND ESWRQQKRKS QAECSASQDD  360
DLEDESGGLR RSGSRSTKRS RTAEVHNLSE RRRRDRINEK MRALQELIPN CNKIDKASML  420
DEAIEYLKTL QLQVQMMSMG SGLCIPPMLL PPTMQHLQIP TMAHFPHLGM GLGYGMGIFD  480
MNSTTTVPLP PMPGAHFPCQ MIPGTAPHAI GIPGRNTLPM FGVPGQPIHP LVPGVQPFPS  540
LASLPVRPNL APQVSATVAY MVQEQQQVSN QQQQSLNDEG TQGASTRDPQ IQTVLQVDNQ  600
HFSVPSSTQS ESSHFLDSGG DKTNTAVRNG VET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389394ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967640.10.0transcription factor APG isoform X1
RefseqXP_004967641.10.0transcription factor APG isoform X1
RefseqXP_004967642.10.0transcription factor APG isoform X1
RefseqXP_004967643.10.0transcription factor APG isoform X1
RefseqXP_004967644.10.0transcription factor APG isoform X1
RefseqXP_022682497.10.0transcription factor APG isoform X1
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A3L6R2670.0A0A3L6R267_PANMI; Transcription factor APG-like isoform X1
STRINGSi000700m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-42phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]