PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g10900.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 428aa    MW: 44766.2 Da    PI: 7.0864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g10900.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000293243571654
                                     HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     + ++   L++l+ +      +K + a++L +++eYIk L
  Zjn_sc00004.1.g10900.1.sm.mkhc 324 LGDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 357
                                     555666677777776.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.363308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-10318376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-4318361No hitNo description
Gene3DG3DSA:4.10.280.101.5E-7318368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGDHAEMLHA APAMYNAAGV AAPHGGWWNT AVSASATCST ELAGFSTWSS ALAASYDMAA  60
EGAKAKSATT TSSGSPGNNS SVTFQEPTAG IADAAGVGAA VQQPLASFTE WAHLMNNGGI  120
TLHGFLQDGQ HDMSSRTDQQ SYINAPSLMN PSSNNLALQG HHEQDHGPQQ LLSNLGSELL  180
LSPTSPYGIQ SSLLRSLMEP TAAVAKPALP PGFQQHDQYG QQMGQAAAAA RFTQPLQFTN  240
DAAFWNPSAG LGMPAAGPDQ ASLRAAKPPA PRAATLALKT AMEGVGESSS IISNKKANGQ  300
PALKKPRLET PSPLPTFKVR KEKLGDRVTA LQQLVAPFGK TDTASVLHET IEYIKFLHDQ  360
VGALSAPYLK NGHQVPHLKS SSPDKSKDGH GEVSLKGRGL CLVPISSTFA VASEVPVDFW  420
TPFGANFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A1E5VU630.0A0A1E5VU63_9POAL; Transcription factor bHLH112
STRINGSi010139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-48bHLH family protein