PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g07680.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 247aa    MW: 25817.7 Da    PI: 9.1477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g07680.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-1663111255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+G+r  +++g+Wv+eIr+p     r  +r++lg+f tae+Aa a++ a+++l+g
  Zjn_sc00004.1.g07680.1.am.mk  63 FYRGIR--SRSGKWVSEIREP-----RkvRRIWLGTFPTAEMAAVAYDVAARALRG 111
                                   69***6..678*********8.....337*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-2863125IPR001471AP2/ERF domain
PROSITE profilePS5103220.32363119IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-1863120IPR016177DNA-binding domain
PfamPF008474.7E-864111IPR001471AP2/ERF domain
CDDcd000183.84E-2664121No hitNo description
Gene3DG3DSA:3.30.730.101.2E-2764120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAFLTLSARC AASLYSRGPP RAFPSNLHAR AATATAHPCK RTDSDDAHGG GPSSPRSTGK  60
HPFYRGIRSR SGKWVSEIRE PRKVRRIWLG TFPTAEMAAV AYDVAARALR GPDAALNFPD  120
LAAARPAPAS TSADDIRAAA SEAAASLEQP PRRVPAAGRG IAPAAAATGP QQHGGSSAAA  180
AVAQPEGGSS APNPYFLDEE ALFETPQFLR NMAAGMMMSP PRISPNSSDD SPDPSEAGES  240
LWSYRDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A6e-1357119163ATERF1
2gcc_A6e-1357119163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557512e-96EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446959.15e-96hypothetical protein SORBIDRAFT_06g025890
SwissprotQ9FJ902e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0A9B4N51e-101A0A0A9B4N5_ARUDO; Uncharacterized protein
STRINGSb06g025890.12e-95(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-19ERF family protein