PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g06320.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 293aa    MW: 31356.9 Da    PI: 5.0851
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g06320.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-20140190255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdp +ng  +r++lg+++tae+Aa a+++a+ +++g
  Zjn_sc00004.1.g06320.1.am.mk 140 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYDTAEDAALAYDRAAYRMRG 190
                                   8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.73E-29139199No hitNo description
Gene3DG3DSA:3.30.730.105.9E-32139198IPR001471AP2/ERF domain
SMARTSM003801.4E-38140204IPR001471AP2/ERF domain
PfamPF008472.4E-14140190IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-23140200IPR016177DNA-binding domain
PROSITE profilePS5103224.25140198IPR001471AP2/ERF domain
PRINTSPR003679.9E-11141152IPR001471AP2/ERF domain
PRINTSPR003679.9E-11164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MLLNPASEAL ALDSIRQHLL EEPAVVEEGQ AKRPAYRPSA SFGSLVADQW SDSLPFRTDD  60
ADDMVVFGAL RDAFAYGWLP DGSFAAVKPE PLPSPDEYSS CCSYDGSSSF GVPELEPLTP  120
GAEATPKREE EEAAVARGKH YRGVRQRPWG KFAAEIRDPA KNGARVWLGT YDTAEDAALA  180
YDRAAYRMRG SRALLNFPVR IGSEIAAATA AAAAGEKRPS PEPATSSDSS SFSASSSSSS  240
SGSTKRRKRG EAAAATMSMP LVPPPSQLSR PAQSWFPAEQ VVAMARRVEQ LVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-39136203168ATERF1
2gcc_A3e-39136203168ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8586831e-124HQ858683.1 Zea mays clone UT1139 AP2-EREBP transcription factor mRNA, partial cds.
GenBankBT0429351e-124BT042935.1 Zea mays full-length cDNA clone ZM_BFc0067I16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142230.11e-117AP2-EREBP transcription factor
RefseqXP_003580272.11e-117PREDICTED: ethylene-responsive transcription factor 2
SwissprotQ404793e-57ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A0A9S4Y91e-122A0A0A9S4Y9_ARUDO; Uncharacterized protein
STRINGGRMZM2G080516_P011e-116(Zea mays)
STRINGBRADI5G17480.11e-116(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-42ethylene responsive element binding factor 1