PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g04990.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 171aa    MW: 18024.5 Da    PI: 11.0727
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g04990.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1134.2e-3520102387
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssa 82 
                                   +k + ++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++s+a  +c   ss  s+
  Zjn_sc00004.1.g04990.1.am.mk  20 KKPSGSKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTSPAvFSC---SSAPST 97 
                                   5667789********************************************************999995444...222222 PP

                           TCP  83 snsss 87 
                                   s+ss 
  Zjn_sc00004.1.g04990.1.am.mk  98 SSSSR 102
                                   21111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-3124119IPR005333Transcription factor, TCP
PROSITE profilePS5136926.732579IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSLAALAPTD AAVATAPARK KPSGSKDRHS KVNGRGRRVR MPIVCAARVF QLTRELGLKS  60
DGQTVEWLLR QAEPSILAAT GSGTSPAVFS CSSAPSTSSS SRSLLLGKRP RQDVDEAPPP  120
LWAAMQARPV VVAWGLSTPA QEQAYASEAQ GHRLNLPSVL SGTTKPAEES R
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9674801e-81EU967480.1 Zea mays clone 303582 TCP-domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580173.15e-63transcription factor TCP21
RefseqXP_004976294.14e-63transcription factor PCF1
SwissprotQ9FTA27e-38TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A0A9DEW82e-80A0A0A9DEW8_ARUDO; Uncharacterized protein
STRINGTraes_2BL_4B6057E06.14e-66(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.14e-37TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]