PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g10920.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 500aa    MW: 53286.4 Da    PI: 10.2403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g10920.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-20232281255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr++  +g+WvAeIr+p   +kr+r++lg+f taeeAa a+++a++kl+g
  Zjn_sc00003.1.g10920.1.am.mk 232 EYRGVRQRT-WGKWVAEIREP---NKRTRVWLGSFATAEEAALAYDEAARKLYG 281
                                   69****999.**********9...337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.15E-28231291No hitNo description
SuperFamilySSF541716.21E-21232290IPR016177DNA-binding domain
PfamPF008474.3E-14232281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-30232290IPR001471AP2/ERF domain
PROSITE profilePS5103222.207232289IPR001471AP2/ERF domain
SMARTSM003804.8E-36232295IPR001471AP2/ERF domain
PRINTSPR003673.7E-10233244IPR001471AP2/ERF domain
PRINTSPR003673.7E-10255271IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MVGGAGSRHV PDTQEDISSS PMKCGDGEEK NSYDDGIRGP VPSPTVKELA RQETVKKSSP  60
IKGKMVGLKV EAGKARSPSV LKEVKATPPS ANSIKNVKAG GMATAGSQLK KPLKVTPMPG  120
HWSHAAASGS SRSQVLGMYA DGAMEHAWPA VTTFKSSHAS LFSARHYLGI PRLLTLSSPS  180
RLPSSISRSA AVSKSRIRAS KKQQGMESLG RKRGWKKGPT REKGGPQNAA CEYRGVRQRT  240
WGKWVAEIRE PNKRTRVWLG SFATAEEAAL AYDEAARKLY GPGAFLNLPH LRTSVSAFQV  300
APGLRQGRRR RRGPGHNVHV IHQRLQEIKN SSPPPPSKPP QGARAPHQLM PLVACCSSPC  360
STLTTGVPAS AALPPPSISC FQALEQAVVT ATMTSDTARC ESDSTGADKP QLDLREFLQQ  420
IGVLKGEEEG AVTKNGFHGD GDVAGALGNS EFDWNALAAD LNDIVGGHGG VLGVNGAFQM  480
DELHEVEQFG SYIPIPVWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-16233289663ATERF1
2gcc_A1e-16233289663ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278741e-105KJ727874.1 Zea mays clone pUT5967 AP2-EREBP transcription factor (EREB38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985522.11e-127PREDICTED: dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-105DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A0E0K9F41e-108A0A0E0K9F4_ORYPU; Uncharacterized protein
STRINGGRMZM2G419901_P011e-106(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-33ERF family protein