PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g10430.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 280aa    MW: 30348.3 Da    PI: 4.4732
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g10430.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1775125155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GVr+++  g+W+Ae+rdp+    +  r++lg+f tae Aa+a++ a++ l+g
  Zjn_sc00003.1.g10430.1.sm.mk  75 SQYHGVRRRP-LGKWAAEVRDPV----KgVRVWLGTFPTAEAAARAYDDAARDLRG 125
                                   78********.8*********75....44************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-2175135IPR016177DNA-binding domain
CDDcd000181.18E-1575135No hitNo description
PROSITE profilePS5103223.03776133IPR001471AP2/ERF domain
PfamPF008473.2E-1176125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3076134IPR001471AP2/ERF domain
SMARTSM003801.0E-3176139IPR001471AP2/ERF domain
PRINTSPR003671.2E-87788IPR001471AP2/ERF domain
PRINTSPR003671.2E-899115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MCGGAILAEL IPSEPERRVT LGTLCPGKSS HDDDFEAAFR EFNDEDEDDE RPLGFGAGGA  60
SAAGSKRGRR RRTPSQYHGV RRRPLGKWAA EVRDPVKGVR VWLGTFPTAE AAARAYDDAA  120
RDLRGAAAKL NFPASSVAAK VRAGKRRAAA DTAAAYVAHL GDERDMPLTA ENDASGCSGA  180
LPDFSWQGMS ESDNGATRPF DLDDIELCSG PKRLRSEAEE TEASRAATED LLFDPFVFGE  240
QLSFFHGGAY EQPEEQSGES MGLWGFDDDR LVDETPVCYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1775133463ATERF1
3gcc_A6e-1775133463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876888e-65BT087688.1 Zea mays full-length cDNA clone ZM_BFb0158A18 mRNA, complete cds.
GenBankJX4699188e-65JX469918.1 Zea mays subsp. mays clone UT3174 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698500.15e-55PREDICTED: ethylene-responsive transcription factor ERF073-like
TrEMBLK4AB618e-54K4AB61_SETIT; Uncharacterized protein
STRINGSi036118m2e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.14e-16ERF family protein