PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g14190.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 281aa    MW: 30174.9 Da    PI: 11.2805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g14190.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-19166216255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr ++ +g+++AeIrdp  +    r++lg+f+tae Aa+a+++a+ +++g
  Zjn_sc00002.1.g14190.1.am.mk 166 KYRGVRKRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEAAARAYDRAAFAMKG 216
                                   8********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.487166224IPR001471AP2/ERF domain
PfamPF008473.1E-13166216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-31166225IPR001471AP2/ERF domain
CDDcd000185.35E-16166225No hitNo description
SuperFamilySSF541711.44E-22166226IPR016177DNA-binding domain
SMARTSM003806.7E-36166230IPR001471AP2/ERF domain
PRINTSPR003673.6E-11167178IPR001471AP2/ERF domain
PRINTSPR003673.6E-11190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVPRTDTNAQ GRERCDRARH HAIGRASPSV RLSVEIIIQL SGRGASSRQG RGGKVQGHLS  60
TCSSARRPSA VHVPQIPLRS DVHLPPRAGR LTSGGGGTLH RSLLDRSLYP SAAAFRAVVR  120
RAETSAAGIG KARSDPNGPA PLMIRQHEVA TRASSSGRTD DKKDGKYRGV RKRPWGKFAA  180
EIRDPERGGS RVWLGTFDTA EAAARAYDRA AFAMKGATAV LNFPAEVGRM SGGSSSSSTS  240
APATAARGRA QIPDSEKVEL EYLDDRILEE LLAEDKHHKN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-26167227363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-26167227666ATERF1
3gcc_A2e-26167227666ATERF1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275122e-87KJ727512.1 Zea mays clone pUT5371 AP2-EREBP transcription factor (EREB95) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-20ERF family protein