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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00002.1.g14190.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 30174.9 Da PI: 11.2805 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 8.9e-19 | 166 | 216 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp + r++lg+f+tae Aa+a+++a+ +++g Zjn_sc00002.1.g14190.1.am.mk 166 KYRGVRKRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEAAARAYDRAAFAMKG 216 8********.**********8333..4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.487 | 166 | 224 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-13 | 166 | 216 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 166 | 225 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.35E-16 | 166 | 225 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-22 | 166 | 226 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.7E-36 | 166 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 167 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 190 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MVPRTDTNAQ GRERCDRARH HAIGRASPSV RLSVEIIIQL SGRGASSRQG RGGKVQGHLS 60 TCSSARRPSA VHVPQIPLRS DVHLPPRAGR LTSGGGGTLH RSLLDRSLYP SAAAFRAVVR 120 RAETSAAGIG KARSDPNGPA PLMIRQHEVA TRASSSGRTD DKKDGKYRGV RKRPWGKFAA 180 EIRDPERGGS RVWLGTFDTA EAAARAYDRA AFAMKGATAV LNFPAEVGRM SGGSSSSSTS 240 APATAARGRA QIPDSEKVEL EYLDDRILEE LLAEDKHHKN Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-26 | 167 | 227 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-26 | 167 | 227 | 6 | 66 | ATERF1 |
3gcc_A | 2e-26 | 167 | 227 | 6 | 66 | ATERF1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727512 | 2e-87 | KJ727512.1 Zea mays clone pUT5371 AP2-EREBP transcription factor (EREB95) gene, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-20 | ERF family protein |