PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g12440.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 323aa    MW: 35045.5 Da    PI: 4.433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g12440.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1894143255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +++GVr+++ +g+W+AeIrdp+    +  r++lg++ +ae Aa+a++ a++ l+g
  Zjn_sc00002.1.g12440.1.sm.mk  94 QFRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTYPSAEAAARAYDVAARDLRG 143
                                   59*******.**********75....44***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-1993153No hitNo description
SMARTSM003803.6E-3894157IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2294152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-3194152IPR001471AP2/ERF domain
PROSITE profilePS5103224.84394151IPR001471AP2/ERF domain
PfamPF008474.1E-1295143IPR001471AP2/ERF domain
PRINTSPR003679.8E-1395106IPR001471AP2/ERF domain
PRINTSPR003679.8E-13133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPARRVM AGHLWPAAAE EGKRQRRKAD DFEAAFRDFD DDSEEDDQMV  60
DGEVEVESKP FVFRAAPSDR PAARHVARRR KPAQFRGVRR RPWGKWAAEI RDPVKGVRVW  120
LGTYPSAEAA ARAYDVAARD LRGSRAKLNF PETSSPAAPP ASRKRTRAVP TALVVDEGED  180
HAGSVKHEAE ANQSSDESGY ALPDFSWQGV SALDLTVARP VLNVEGDEQP STDLGKRMRT  240
EEPAAERADS EASPASTESE SDALFDAFLL GDQFPFFGGG GAYESLDSLF SADAVQGSNA  300
AADEGIELWS FDDDCLVVDN LSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1991151263ATERF1
3gcc_A3e-1991151263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188100RRKPAQFRGVRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.11e-109ethylene-responsive transcription factor ERF073-like
TrEMBLA0A3L6SDZ01e-109A0A3L6SDZ0_PANMI; Uncharacterized protein
STRINGPavir.Ia04158.1.p4e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-22related to AP2 12