PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g00450.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 374aa    MW: 39996.6 Da    PI: 4.9293
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g00450.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.92.7e-3271170297
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkep 78 
                                   lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++ksqlveK+rrLK+K++++v++ +  g ++
  Zjn_sc00002.1.g00450.1.sm.mk  71 LFQRLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQLVEKLRRLKRKYRNCVDRlRVAGPNF 151
                                   69*************************9977778***************************************88899*** PP

                        DUF573  79 sfskehdqkifelskkiWg 97 
                                   sf+++h+q ife+++ iW+
  Zjn_sc00002.1.g00450.1.sm.mk 152 SFRSPHEQAIFEIARTIWR 170
                                   ******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-2972169IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MFPMVDDPSA AGAGVMISSS FPDADAYGNG DSEDIDFAGD PNSHASFSAA PATAPASAGA  60
GGSGSGERRA LFQRLWTDED EIVILRAFAE FTAQRGTAFA SHQYDTTPFY EDMRGRLQTG  120
FTKSQLVEKL RRLKRKYRNC VDRLRVAGPN FSFRSPHEQA IFEIARTIWR PASDKHGRDS  180
DDEGNDDGLA IDAAAAARVN GESAKSPTSR PRRGRRRRAG DFPAGDAAEA LPQAPMPAMT  240
TEDALPSFPQ PTAMDGTGTV TMEQPAAAGL PAMLSAAATV ATTTGTAENP ILASLFKEMF  300
RSMLNISSSS ATLGLEPPPA IPGLPMDGEK WRQQRILELE VYLRRIALLQ DQAQAALEEL  360
RSAPPQYGAG GTNT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876801e-126BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds.
GenBankEU9542301e-126EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds.
GenBankJX4285201e-126JX428520.1 Zea mays subsp. mays clone pUT3119 GBP18 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.11e-155probable transcription factor At3g04930
TrEMBLA0A2T7CC961e-154A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBLA0A2T8I4R31e-154A0A2T8I4R3_9POAL; Uncharacterized protein
STRINGGRMZM2G026417_P011e-150(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-32DNA-binding storekeeper protein-related transcriptional regulator