PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00001.1.g01050.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 170aa    MW: 18536.8 Da    PI: 8.0425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00001.1.g01050.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-1970119356
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae Aa+a+++a+++++g+
  Zjn_sc00001.1.g01050.1.sm.mk  70 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRGA 119
                                   9*******.**********843...4*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-3669132IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2269127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-3269127IPR001471AP2/ERF domain
PROSITE profilePS5103224.59269126IPR001471AP2/ERF domain
PRINTSPR003671.8E-117081IPR001471AP2/ERF domain
CDDcd000181.32E-1570127No hitNo description
PfamPF008471.2E-1270118IPR001471AP2/ERF domain
PRINTSPR003671.8E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MCGGAIISEY IPHRPTGGGS SKRSLCATDF WPDAAADFDV DPVNPECATG AAYPVADQEP  60
ARKRERKTMY RGIRRRPWGK WAAEIRDPAK GARVWLGTFA TAEAAARAYD RAARRIRGAK  120
AKVNFPNEDP PPDNEYDDHV MMPVIYDAVL GLSNLSTDGA RGGTDPALFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A7e-2370126663ATERF1
2gcc_A7e-2370126663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16068ARKRERKTM
26276KRERKTMYRGIRRRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768704e-90EU976870.1 Zea mays clone 992413 mRNA sequence.
GenBankKJ7283484e-90KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921624.13e-51PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotP427366e-38RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0E0LPQ77e-47A0A0E0LPQ7_ORYPU; Uncharacterized protein
STRINGSi031079m3e-45(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-21ERF family protein