PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036223001
Common NameVIT_14s0081g00560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 305aa    MW: 34286.2 Da    PI: 10.0892
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036223001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.3e-32237294359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  GSVIVT01036223001 237 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHS 294
                        9************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-18188233IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.0E-34223294IPR003657WRKY domain
PROSITE profilePS5081130.079230296IPR003657WRKY domain
SuperFamilySSF1182902.09E-27233294IPR003657WRKY domain
SMARTSM007744.0E-39235295IPR003657WRKY domain
PfamPF031061.3E-27237293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEGVEEANKS AVESCHRVLS FLCQPQDQVQ YRNLMMETEE AVFKFKRVVS LLNNGFGHER  60
VRKFRRLRSS LPQSIFLETP NYKPNPSPKP LQLLPTNFLE NPLPEIDSKA KIKPPLQIMK  120
YQADMMYSRS NSGINLKFDG SSCTPTMSST RSFISSLSMD GSVANLDGNS FHLIGVPQLS  180
DPNSHQPRRR CSGRGEDGSV KCGSSGKCHC SKRRKLRVKR SIKVPAISNK VADIPPDEYS  240
WRKYGQKPIK GSPHPRGYYK CSSMRGCPAR KHVERCLEDP SMLIVTYEGE HNHSRLLSSQ  300
SAHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20223293271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.101710.0cell culture| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4386321e-180AM438632.1 Vitis vinifera contig VV78X112776.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270614.20.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ93WU61e-120WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLF6HVI70.0F6HVI7_VITVI; Uncharacterized protein
STRINGVIT_14s0081g00560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-123WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]