PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036059001
Common NameVIT_06s0080g01110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family E2F/DP
Protein Properties Length: 447aa    MW: 49472.1 Da    PI: 4.5317
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036059001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.8e-27124189171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  GSVIVT01036059001 124 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 189
                        6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-29122191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.81E-17124187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.2E-35124189IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-24126189IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146606.41E-48200306No hitNo description
SuperFamilySSF1440749.42E-34201306No hitNo description
PfamPF164214.9E-33205304IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MHPPKRHLPF PPARPPFVPS PGDYHRFSSS GRVPDHEADE AVVVKSPQLK RKSEPDYEAE  60
SSEWTAVPGF TEVVNSPVQT PVSGKGGKAQ KTSRITKCSR SGPQTPVSNA GSPGNNLTPV  120
GPCRYDSSLG LLTKKFINLI KHAEDGILDL NKAADTLEVQ KRRIYDITNV LEGIGLIEKK  180
LKNRIQWKGL DVSRPGEVDE NVTSLQEEVE NLSIQERRLD AQIRDMQERL RDLSEDENNQ  240
KWLFVTEEDI KGLPCFQKET LIAIKAPHGT TLEVPDPDEA VDYPQRRYRI VLRSSMGPID  300
VYLVSQFEEK FEEINGLEAP PSFPSSSGYN EDPTAAMVTE ESRGKEIEIQ GQDAHRMSSD  360
LNASQDFVSG IMKIVPSDVD SDADYWLLSD ADVSITDMWR TEPGVEWNEL DALNDDYAMA  420
NVSTPQPQTP PSSAAEVPPA ANTPGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-26119190274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272473.10.0PREDICTED: transcription factor E2FB
SwissprotQ9FV711e-165E2FB_ARATH; Transcription factor E2FB
TrEMBLD7TCP60.0D7TCP6_VITVI; Putative uncharacterized protein
STRINGVIT_06s0080g01110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12251749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-160E2F transcription factor 1