PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035612001
Common NameVIT_04s0008g03250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92472.7 Da    PI: 6.0809
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035612001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181876357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  GSVIVT01035612001 18 KYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                       5679*****************************************************97 PP

2START178.93e-561623702205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W + ++ +++l+v+s+g  g++
  GSVIVT01035612001 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVSLEPT-RVAEILKDWPSWYRECRNVDVLNVLSTGngGTI 252
                        789*******************************************************.9999999999*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    + +vRae+lpSg+li+p+++g+s +++v+h+dl+ +++++
  GSVIVT01035612001 253 ELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQYFVRAEKLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 344
                        **********************************************998777889************************************* PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s++  ++kt++a+l+++++
  GSVIVT01035612001 345 VLRPLYESSTLLAQKTTMAALRQLRQ 370
                        **********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4511377IPR001356Homeobox domain
SMARTSM003891.3E-151581IPR001356Homeobox domain
SuperFamilySSF466899.84E-171781IPR009057Homeodomain-like
CDDcd000861.78E-161878No hitNo description
PfamPF000463.2E-161976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-182076IPR009057Homeodomain-like
CDDcd146861.15E-670109No hitNo description
PROSITE profilePS5084825.927152380IPR002913START domain
CDDcd088752.00E-79156371No hitNo description
Gene3DG3DSA:3.30.530.202.6E-22161368IPR023393START-like domain
SMARTSM002342.1E-41161371IPR002913START domain
SuperFamilySSF559614.94E-36161372No hitNo description
PfamPF018521.6E-53162370IPR002913START domain
PfamPF086709.6E-53696838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MAVSSSCKDA KMALDNGKYV RYTPEQVEAL ERLYHDCPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ  120
QTQNATLATT DTSCESVVTS GQHHLTPQHP PRDASPAGLL SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIVAIS HGCTGVAARA CGLVSLEPTR VAEILKDWPS WYRECRNVDV  240
LNVLSTGNGG TIELLYMQLY APTTLAPARD FWLLRYTSVL EDGSLVVCER SLNNTQNGPS  300
MPPVQYFVRA EKLPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTLLAQKT  360
TMAALRQLRQ ISQEVSQPTN TGWGRRPAAL RALGQRLTKG FNEAVNGFTD EGWSMMESDG  420
IDDVTLLVNS SPAKMMGVNL SYASGFPSMS NAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADSSIDAYS AAAVKAGPCT LPVSRAGGYG GQVILPLAHT IEHEEFMEVI KLENVDHYRE  540
DLMMSGDVFL LQLCSGVDDN AVGTCSELIF APIDASFSDD APLLPSGFRI IPLDSGVDGS  600
SPNRTLDLAS SLEVGPAGNK ASSDNSGHTG SAKSVMTISF QFAFEMHLQE NVASMARQYV  660
RSIISSVQRV ALALSPSRFG PQMGFRPLPG TPEAHTLARW ICQSYRCYLG VELLKPSNEG  720
NESILKTLWH HSDAVMCCSL KALPVFTFAN QAGLDMLETT LVALQDITLE KTFDDNGRKT  780
LCSEFPQIMQ QGFVCLQGGV CLSSMGRPVS YERAVAWKVL TEEDNAHCIC FMFINWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.11040.0bud| fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283717.30.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLF6H3C80.0F6H3C8_VITVI; Uncharacterized protein
STRINGVIT_04s0008g03250.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]