PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035406001
Common NameLOC100247474, VIT_04s0008g01290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 307aa    MW: 34091.4 Da    PI: 8.5535
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035406001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.2e-19175208134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  GSVIVT01035406001 175 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 208
                        *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.3E-20169220IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-13171209No hitNo description
PROSITE profilePS5011412.466173205IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-15173208IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.09E-13174206No hitNo description
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
PfamPF003204.1E-17175208IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTPVFLNTSS SSPFPALELK EDHQHFQLLF STNPPSYQAS SSHPCPSFFN SSTQSQRGDH  60
SPRDPQQHED KDDKYISHGG CGESQVFSSS SLLQPMADDN KSSHKLSVFK KEEGDEGNKS  120
TEKWMSSKMR LMRKMMNSDC TTAKIEQKVE DHQQWDNINE FNSSNNTSNI PIRVCSDCNT  180
TKTPLWRSGP RGPKSLCNAC GIRQRKARRA MAAAAAAAAN GTAVGTEISP MKMKLPNKEK  240
KMHTSNVGQQ KKLCKPPCPP PTEKKLCFED FTSSICKNSG FRRVFPRDEE EAAILLMALS  300
CDLVYS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.14860.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3803180.0FQ380318.1 Vitis vinifera clone SS0ACG71YI23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279283.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLD7STR60.0D7STR6_VITVI; Uncharacterized protein
STRINGVIT_04s0008g01290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.15e-27cytokinin-responsive gata factor 1