PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033744001
Common NameVIT_08s0007g04200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HD-ZIP
Protein Properties Length: 221aa    MW: 25823.2 Da    PI: 9.0773
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033744001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1960113356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+ ++t+eqle Le+ F+++ ++  +++ +LA++lgL+ rq+ vWFqNrRa++k
  GSVIVT01033744001  60 KKKRLTNEQLESLERSFQEEIKLEPDRKMKLARELGLQPRQIAVWFQNRRARWK 113
                        56779************************************************9 PP

2HD-ZIP_I/II119.22.2e-3859150192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekk+rl++eq+++LE+sF+ee kLep+rK++lareLglqprq+avWFqnrRAR+ktk+lE+ y++Lk++yd +++e+++L++ev++L+  l+
  GSVIVT01033744001  59 EKKKRLTNEQLESLERSFQEEIKLEPDRKMKLARELGLQPRQIAVWFQNRRARWKTKELERLYDVLKQEYDLMSKEKQKLQEEVSKLKGILR 150
                        69*************************************************************************************97665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1948116IPR009057Homeodomain-like
PROSITE profilePS5007117.81555115IPR001356Homeobox domain
SMARTSM003891.9E-1658119IPR001356Homeobox domain
PfamPF000469.8E-1760113IPR001356Homeobox domain
CDDcd000861.55E-1560116No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2061122IPR009057Homeodomain-like
PRINTSPR000317.1E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000317.1E-695111IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDWNGNLRPF VSRPESSFTF LYNYNYDPYP GMEVKHPVSA ETAHAMVRPM DKSSYGNQEK  60
KKRLTNEQLE SLERSFQEEI KLEPDRKMKL ARELGLQPRQ IAVWFQNRRA RWKTKELERL  120
YDVLKQEYDL MSKEKQKLQE EVSKLKGILR EQATRKQVSM GYTEVSGEET VESTSITIRS  180
SNKPRGLSHQ IADCNYVYTA EEYNPVSPPY WGVLPPYPST *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4702480.0AM470248.2 Vitis vinifera contig VV78X103570.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283931.21e-162PREDICTED: putative homeobox-leucine zipper protein ATHB-51 isoform X2
SwissprotQ9LZR05e-57ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLD7TIZ21e-162D7TIZ2_VITVI; Uncharacterized protein
STRINGVIT_08s0007g04200.t011e-163(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-51homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]