PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032911001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TCP
Protein Properties Length: 466aa    MW: 52181.7 Da    PI: 9.0525
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032911001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.41.5e-31137214374
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......e 74 
                        g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++       
  GSVIVT01032911001 137 GGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLQMPPGNFVqshqpmI 214
                        78*************************************************************999998773221111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.019138196IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-28138225IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MILFSWFACM NIFYGMRVHQ FVDPCDGDSL TMPFVVVDKA LKVHSNSCAV YLYLSYQLTI  60
NGLINLICYQ KHRTFSVHIV LRNCMKKSHA TNSREADFSA KLEGDESDAR IAKNSSTSTP  120
WLRLKDPRIV RVSRAYGGKD RHSKVCTVRG LRDRRVRLSV PTAIQLYDLQ DRLGLNQPSK  180
VVDWLLNAAK HEIDELPPLQ MPPGNFVQSH QPMITSLEVG ASQFNKEELK ISNGIDWEDP  240
SGLPRSSFWG SNAFLRAKSK EVPRENVNEK VNWMKRNEEG GQVSSNIFPP RTNQSSLPGL  300
LSSSMPYGPY YHLEPSNLSL STLGSHGLTS QTEDLHNFSV VPLPSSLSLT SGSQVLVCPP  360
GATQSYFPPH VPTSMEFDPR QINHFQLLSS SSQNILPNAL TPPLYSIGQP VRPLHLSMAH  420
KIHHSQSING GHPNKDKCDR KLKKMLENMI YFQCCVSDLV TARLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-18143197155Putative transcription factor PCF6
5zkt_B2e-18143197155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.103350.0bud| inflorescence| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4860980.0AM486098.2 Vitis vinifera contig VV78X124714.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277074.10.0PREDICTED: transcription factor TCP13
TrEMBLA0A438HE340.0A0A438HE34_VITVI; Transcription factor TCP13
TrEMBLF6H4920.0F6H492_VITVI; Uncharacterized protein
STRINGVIT_14s0068g00330.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.13e-46plastid transcription factor 1