PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031982001
Common NameLOC100853961, VIT_03s0063g02670
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 97aa    MW: 10770.3 Da    PI: 9.5272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031982001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding284.9e-091054244
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       g WT    +l+ +a +++ ++   +W  +a+ +g g++++++k ++
  GSVIVT01031982001 10 GLWTSKQNKLFEKALALYDKDtpdRWQNVAKAVG-GKSAEEVKRHY 54
                       56********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.493458IPR017877Myb-like domain
SMARTSM007171.1E-7860IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-121066IPR009057Homeodomain-like
PfamPF002494.2E-71054IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-51264IPR009057Homeodomain-like
CDDcd001671.06E-61254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASGSRMGSG LWTSKQNKLF EKALALYDKD TPDRWQNVAK AVGGKSAEEV KRHYEILIED  60
LKHIESGHVP IPNYKSTGSN SIGDQEQRLL KCIKLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-36487286RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.84541e-162pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4518911e-143AM451891.2 Vitis vinifera contig VV78X106217.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631666.11e-66PREDICTED: protein RADIALIS-like 3 isoform X1
SwissprotQ1A1731e-40RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A438EL083e-65A0A438EL08_VITVI; Protein RADIALIS-like 6
TrEMBLD7TQ273e-65D7TQ27_VITVI; Uncharacterized protein
STRINGVIT_03s0063g02670.t015e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-43RAD-like 6