PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031975001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 112aa    MW: 12655.1 Da    PI: 9.7497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031975001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.2e-082467344
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       +WT+   + + +a + + ++   +W  +ar +g g+t +++k ++
  GSVIVT01031975001 24 SWTAKQNKAFEEALAVYDKDtpdRWYNVARAVG-GKTVEEVKRHY 67
                       7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.0322075IPR017884SANT domain
SMARTSM007176.2E-72173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-52477IPR009057Homeodomain-like
SuperFamilySSF466891.88E-122477IPR009057Homeodomain-like
CDDcd001671.58E-52567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MRQLGSNNLF TQENSMSSRS SGSSWTAKQN KAFEEALAVY DKDTPDRWYN VARAVGGKTV  60
EEVKRHYEIL VEDIKSIDSD KVPFPNYKTT GASGRSNMSD QEKRMMNLKL R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-4317111393RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.127131e-166fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expressed at stage two (plastochrons 7 and 8), when the floral meristem comprised a loaf-shaped bulge of cells. Expression was in the dorsal region of the floral meristem. At stage four, when sepal primordia had emerged around the meristem dome, expression could be seen in the dorsal sepal primordium. At stage five, expressed in emerging dorsal primordia of whorls two and three. In older flower buds (stages seven and eight), expression was found mainly in the dorsal petals and staminode. {ECO:0000269|PubMed:15790677}.
UniprotTISSUE SPECIFICITY: Specifically expressed in the dorsal region of developing flowers. {ECO:0000269|PubMed:15790677}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4263091e-145AM426309.2 Vitis vinifera contig VV78X010870.18, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631660.12e-67PREDICTED: protein RADIALIS-like 1
SwissprotQ58FS32e-43RAD_ANTMA; Transcription factor RADIALIS
TrEMBLF6HQM64e-65F6HQM6_VITVI; Uncharacterized protein
STRINGVIT_03s0063g02620.t017e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-42RAD-like 1
Publications ? help Back to Top
  1. Corley SB,Carpenter R,Copsey L,Coen E
    Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73
    [PMID:15790677]
  2. Costa MM,Fox S,Hanna AI,Baxter C,Coen E
    Evolution of regulatory interactions controlling floral asymmetry.
    Development, 2005. 132(22): p. 5093-101
    [PMID:16236768]
  3. Stevenson CE, et al.
    Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8
    [PMID:16511186]
  4. Stevenson CE, et al.
    Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus.
    Proteins, 2006. 65(4): p. 1041-5
    [PMID:17044043]