PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026145001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TCP
Protein Properties Length: 289aa    MW: 30556.5 Da    PI: 10.7992
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026145001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.32.3e-37101177274
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....e 74 
                        a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++    +
  GSVIVT01026145001 101 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSsvsvS 177
                        789*************************************************************9999977733332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.6E-32107179IPR005333Transcription factor, TCP
PROSITE profilePS5136927.892107161IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042752Biological Processregulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKRVRSAALL YKLSLSTIFI AHSLSKHLVT ATPAHTRSQT TNKTKTPNTG QRKRTSWWKK  60
KFFFEGISKH MSTSDGAANG VTNGAIVDSQ RQQQPGNGAL AVKKPPAKDR HSKVDGRGRR  120
IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSSVSVSPDA  180
VVAAAAAAAA AAGGFWAPTI SGRFMQQPMG EASAARVGNY LPIAQGHLNL LASLSGAPAS  240
SGRRDDDPPT EGDDSKEGGL EVVNDFEGGF LGFHSLGFVV GNEAFWGF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.36090.0bud| fruit| inflorescence| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00499DAPTransfer from AT5G08330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4612660.0AM461266.1 Vitis vinifera contig VV78X201682.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268058.14e-94PREDICTED: transcription factor TCP7
TrEMBLF6HIN58e-93F6HIN5_VITVI; Uncharacterized protein
STRINGVIT_10s0042g00170.t011e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP85141016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.11e-36TCP family protein