PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024564001
Common NameLOC100244907, VIT_06s0004g08050
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 480aa    MW: 53006.8 Da    PI: 8.2458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024564001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08428476247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        ++W+  E++ l  +v ++G+g+W++I ++     + Rt  ++k++w++ 
  GSVIVT01024564001 428 KKWSILEEDTLRTGVLKFGKGNWTLILNCYRdifEERTQVDLKDKWRNM 476
                        68*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.004422477IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-10423478IPR009057Homeodomain-like
SMARTSM007172.2E-4426479IPR001005SANT/Myb domain
PfamPF002497.0E-7428476IPR001005SANT/Myb domain
CDDcd116601.32E-17428478No hitNo description
SuperFamilySSF466892.04E-13429478IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0031627Biological Processtelomeric loop formation
GO:0043067Biological Processregulation of programmed cell death
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDEDVSRWIL EFMIRKPIGD SLVRRLISIL PLSNSHPRMK KTVLLRKIES EISDGSVSET  60
ILELLEIIEE LDYKEGVAVL DSMKNAYCAV AVECTVKFLV GSGGKEGKYF DAVKRIWRGK  120
IHKMESSATA GLVSDQLRKW RDDIEAAVWD ARVCEDILAK NTRNDALRLV RAYVAEAWAI  180
MGPPFLELAA RAIKLVEGLP GAGNGSTCNQ AAACSPNVAT DLVVPDKDKE TLKASMLPKR  240
KHVGGHGRRS RGGVKITDTE EVRGQTSGSK YDCLPSPEVD RVQAALKSSS LELQALVKDP  300
LPEALQLAEA VISGLAKKDV NHEPLTKDQG IIDVAAPNPS VGKNLVADQT NEADSGHQCT  360
TDQNNVPRPS LMARNGTART CEWDDSIDAS PEGLSSDTNI CLPSPKRKAV SPLKKYEITK  420
LAKRRQMKKW SILEEDTLRT GVLKFGKGNW TLILNCYRDI FEERTQVDLK DKWRNMTKY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.135880.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4415340.0AM441534.1 Vitis vinifera contig VV78X035471.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276395.20.0PREDICTED: uncharacterized protein LOC100244907
TrEMBLA0A438KNT60.0A0A438KNT6_VITVI; Uncharacterized protein
TrEMBLD7SJJ10.0D7SJJ1_VITVI; Uncharacterized protein
STRINGVIT_06s0004g08050.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-34MYB_related family protein