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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01024564001 | ||||||||
Common Name | LOC100244907, VIT_06s0004g08050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB_related | ||||||||
Protein Properties | Length: 480aa MW: 53006.8 Da PI: 8.2458 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 428 | 476 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 ++W+ E++ l +v ++G+g+W++I ++ + Rt ++k++w++ GSVIVT01024564001 428 KKWSILEEDTLRTGVLKFGKGNWTLILNCYRdifEERTQVDLKDKWRNM 476 68*********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.004 | 422 | 477 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-10 | 423 | 478 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-4 | 426 | 479 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-7 | 428 | 476 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.32E-17 | 428 | 478 | No hit | No description |
SuperFamily | SSF46689 | 2.04E-13 | 429 | 478 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MDEDVSRWIL EFMIRKPIGD SLVRRLISIL PLSNSHPRMK KTVLLRKIES EISDGSVSET 60 ILELLEIIEE LDYKEGVAVL DSMKNAYCAV AVECTVKFLV GSGGKEGKYF DAVKRIWRGK 120 IHKMESSATA GLVSDQLRKW RDDIEAAVWD ARVCEDILAK NTRNDALRLV RAYVAEAWAI 180 MGPPFLELAA RAIKLVEGLP GAGNGSTCNQ AAACSPNVAT DLVVPDKDKE TLKASMLPKR 240 KHVGGHGRRS RGGVKITDTE EVRGQTSGSK YDCLPSPEVD RVQAALKSSS LELQALVKDP 300 LPEALQLAEA VISGLAKKDV NHEPLTKDQG IIDVAAPNPS VGKNLVADQT NEADSGHQCT 360 TDQNNVPRPS LMARNGTART CEWDDSIDAS PEGLSSDTNI CLPSPKRKAV SPLKKYEITK 420 LAKRRQMKKW SILEEDTLRT GVLKFGKGNW TLILNCYRDI FEERTQVDLK DKWRNMTKY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.13588 | 0.0 | bud |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM441534 | 0.0 | AM441534.1 Vitis vinifera contig VV78X035471.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276395.2 | 0.0 | PREDICTED: uncharacterized protein LOC100244907 | ||||
TrEMBL | A0A438KNT6 | 0.0 | A0A438KNT6_VITVI; Uncharacterized protein | ||||
TrEMBL | D7SJJ1 | 0.0 | D7SJJ1_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g08050.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1503 | 14 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58340.2 | 8e-34 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01024564001 |
Entrez Gene | 100244907 |