PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023283001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TCP
Protein Properties Length: 388aa    MW: 42378.1 Da    PI: 8.0579
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023283001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.42.1e-411082132113
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                        +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s+     
  GSVIVT01023283001 108 PPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTISA----- 194
                        5789*****************************************************************999777777777773333..... PP

                TCP  93 saakskksqksaasalnlake 113
                          ++sk++++s + al+la++
  GSVIVT01023283001 195 --PPSKSAPHSFHGALALAHH 213
                        ..2334444444444444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-39113233IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496114168IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEIDEEVDLH RSRWWSLLLG GQVVEEDHPT QPHSWAPAPA NLASFEIWMP PPLLLLQTPL  60
LLSVVIAPPL LLLRLRRRSW LTPPSPSLPD PRLTGADRAA QLTIGTNPPA KRSTKDRHTK  120
VDGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIAATG TGTIPANFST  180
LNVSLRSSGS TISAPPSKSA PHSFHGALAL AHHPHYEEGF PHTAMLGFHQ QPHLLSADQI  240
GDALPGALEN TTTASEAASG NGNNKTTSLH MGKSPQEQQP GSTFWMLPPH MWALPTAAPT  300
TTGNTLQAPL HFMPRFNLAS NLDFQGGRAN PLQLGSMLMQ QHPSQHLGTR TSLKEQTVEM  360
KIQTAHNSSN IPFQSSFFWL VRFEDMG*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4267490.0AM426749.2 Vitis vinifera contig VV78X010330.4, whole genome shotgun sequence.
GenBankFQ3940030.0FQ394003.1 Vitis vinifera clone SS0AFA23YB21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658023.11e-158PREDICTED: transcription factor TCP8
SwissprotQ9C5185e-61TCP8_ARATH; Transcription factor TCP8
TrEMBLF6HK551e-157F6HK55_VITVI; Uncharacterized protein
STRINGVIT_12s0035g00690.t011e-158(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.15e-64TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]