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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01022662001 | ||||||||
Common Name | VIT_02s0033g00440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB_related | ||||||||
Protein Properties | Length: 176aa MW: 20082.4 Da PI: 5.3195 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1e-08 | 8 | 53 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 +g+W++eE ll ++v+++G g W++ r + gRt++++k++w+++ GSVIVT01022662001 8 KGAWSQEE-VLLRKCVEKYGEGKWHL-FRFLElPGRTANDVKNYWHTH 53 68888766.79**************9.8888899***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.25 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.25E-10 | 3 | 56 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-14 | 5 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-4 | 7 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-7 | 8 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-8 | 10 | 53 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MESLGVRKGA WSQEEVLLRK CVEKYGEGKW HLFRFLELPG RTANDVKNYW HTHHFKKKPW 60 PYKFSKTLPR FELKTKAVDT LDTQVSASSK PSSTSQQPND DIIWWESLLD GHAQRDQETD 120 FSTRCSGEML ISSLWTEETA TETTGTTDCM VEQIQGGEGD FPFSDTPNTQ AKDLM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM427669 | 0.0 | AM427669.1 Vitis vinifera contig VV78X155014.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010664911.1 | 5e-78 | PREDICTED: transcription factor MYB90 | ||||
TrEMBL | D7U3T0 | 1e-128 | D7U3T0_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0033g00440.t01 | 1e-129 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 5e-12 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01022662001 |