PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022662001
Common NameVIT_02s0033g00440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 176aa    MW: 20082.4 Da    PI: 5.3195
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022662001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-08853147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47
                       +g+W++eE  ll ++v+++G g W++  r +   gRt++++k++w+++
  GSVIVT01022662001  8 KGAWSQEE-VLLRKCVEKYGEGKWHL-FRFLElPGRTANDVKNYWHTH 53
                       68888766.79**************9.8888899***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.25158IPR017930Myb domain
SuperFamilySSF466897.25E-10356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-14560IPR009057Homeodomain-like
SMARTSM007174.8E-4756IPR001005SANT/Myb domain
PfamPF002496.2E-7853IPR001005SANT/Myb domain
CDDcd001671.60E-81053No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MESLGVRKGA WSQEEVLLRK CVEKYGEGKW HLFRFLELPG RTANDVKNYW HTHHFKKKPW  60
PYKFSKTLPR FELKTKAVDT LDTQVSASSK PSSTSQQPND DIIWWESLLD GHAQRDQETD  120
FSTRCSGEML ISSLWTEETA TETTGTTDCM VEQIQGGEGD FPFSDTPNTQ AKDLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4276690.0AM427669.1 Vitis vinifera contig VV78X155014.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664911.15e-78PREDICTED: transcription factor MYB90
TrEMBLD7U3T01e-128D7U3T0_VITVI; Uncharacterized protein
STRINGVIT_02s0033g00440.t011e-129(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-12myb domain protein 113