PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021625001
Common NameLOC100254822, VIT_10s0003g04670, VITISV_033098
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HD-ZIP
Protein Properties Length: 846aa    MW: 92836 Da    PI: 6.2498
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021625001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181775357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  GSVIVT01021625001 17 KYVRYTPEQVEALERVYSECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                       6789*****************************************************97 PP

2START180.69e-571663732204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g++
  GSVIVT01021625001 166 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTI 256
                        68999*****************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+    ss++Rae+lpSg+li+p+++g+s +++v+hvdl+++++++
  GSVIVT01021625001 257 ELIYMQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppASSYIRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAWSVPE 348
                        *******************************************99999999***************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 180 llrslvksglaegaktwvatlqrqc 204
                        +lr+l++s+ + ++kt+va+l++ +
  GSVIVT01021625001 349 VLRPLYESSKILAQKTTVAALRHIR 373
                        *********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8071276IPR001356Homeobox domain
SMARTSM003891.8E-151480IPR001356Homeobox domain
CDDcd000861.33E-161777No hitNo description
SuperFamilySSF466891.84E-161779IPR009057Homeodomain-like
PfamPF000463.0E-161775IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
CDDcd146861.79E-669108No hitNo description
PROSITE profilePS5084826.539156384IPR002913START domain
CDDcd088754.82E-72160376No hitNo description
Gene3DG3DSA:3.30.530.205.6E-23164370IPR023393START-like domain
SMARTSM002342.1E-54165375IPR002913START domain
PfamPF018521.6E-54166373IPR002913START domain
SuperFamilySSF559616.59E-39166377No hitNo description
SuperFamilySSF559611.06E-5413498No hitNo description
SuperFamilySSF559611.06E-5526600No hitNo description
PfamPF086707.0E-50700844IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MALSMHKESK QQMDSSKYVR YTPEQVEALE RVYSECPKPS SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYMRQQ  120
LQSASTATTD TSCESVVMSG QHQQQQNPTP QHPQRDASNP AGLLAIAEET LAEFLSKATG  180
TAVDWVQMIG MKPGPDSIGI VAVSRNCSGV AARACGLVSL EPTKVAEILK DRPSWFRDCR  240
CLDVLSVIPT GNGGTIELIY MQTYAPTTLA SARDFWTLRY TTSLEDGSLV ICERSLTSST  300
GGPTGPPASS YIRAEMLPSG YLIRPCEGGG SIIHIVDHVD LDAWSVPEVL RPLYESSKIL  360
AQKTTVAALR HIRQIAQETS GEIQYGGGRQ PAVLRTFSQR LCRGFNDAVN GFADDGWSLM  420
GSDGVEDVTI VINSSPSKFL GPQYNSTMFP TFGGGVLCAK ASMLLQNVPP ALLVRFLREH  480
RSEWADYGVD AYSAACLKAS PYEVPCARPG GFPSSQVILP LAHTVEHEEF LEVVRLEGHA  540
FSPEDVALTR DMYLLQLCSG VDENAAGACA QLVFAPIDES FADDAPLLPS GFRVIPLDPK  600
TDGPAATRTL DLASTLEVGA GGARPANESD LNNYNLRSVL TIAFQFTFEN HVRDNVAAMA  660
RQYVRSVMAS VQRVAMAIAP SRLSSHMGLK PLPGSPEALT LARWICRSYR IHTGGELLRV  720
DSQGGDAVLK LLWNHSDAIM CCSLKTNASP VFTFANQAGL DMLETTLVAL QDIMLDKILD  780
EAGRKILCSE FSKIMQQGFA YLPAGICTSS MGRPVSYEQA IAWKVLNDED SNHCLAFMFI  840
NWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.55560.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281868.20.0PREDICTED: homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A438IPB20.0A0A438IPB2_VITVI; Homeobox-leucine zipper protein HOX32
TrEMBLA5AMZ10.0A5AMZ1_VITVI; Uncharacterized protein
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]