PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020814001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 545aa    MW: 59885 Da    PI: 7.4542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020814001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.2e-16342388455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  GSVIVT01020814001 342 VHNLSERRRRDRINEKMKALQELIPHS-----NKSDKASMLDEAIEYLKSLQ 388
                        6*************************7.....59*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-19336398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.942338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-14341386No hitNo description
Gene3DG3DSA:4.10.280.103.1E-19342395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-14342388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-17344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MNHPLLPDWN IEGDVPVTNQ KKPMGQEHEL VELLWRNGQV VLHSQTQRKS GLAPNESKQV  60
QKHDQTMLRN GGSCGNWSNL IQDEESISWI QYPLDDSLDK EFCSNLFMEL PPNDPVQPEK  120
PVRHSEQEKS VPSSQQPIFK HLGSPEFPGN PMPPPKFQVP GSVQQNCSSG GFGKIVNFPN  180
FSFPGRSNLG SSKAQLGGKG SGNMAQGGDA KEGSVMTVGL SHCGSNQVVN EADLSRFSSS  240
GVGTGCLSSG HVKENVMRIV SQGDRRQTET LEPTVTSSSG GGSGSSFGRT YKQSTDTNSH  300
KRKGREAEES ECQSEAAEHE SAARNKASQR SGSTRRSRAA EVHNLSERRR RDRINEKMKA  360
LQELIPHSNK SDKASMLDEA IEYLKSLQLQ LQLMWMGGGV APMMFPGVQH YMARMGMGMC  420
PPPLPSIHNP MHLPRVQLVD QSTSAVPPSN QPPICQTPVL NPVNYQNQMP NPNFPEQFAH  480
YMGFHPMQTP SQPMNVFSFG SQTSWVNTSG YACCSNAFGS ITHQVRPLQD DDKSHPLISS  540
WWMA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346351ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.169480.0inflorescence| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4681680.0AM468168.2 Vitis vinifera contig VV78X251080.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278399.10.0PREDICTED: transcription factor PIF4
RefseqXP_010657098.10.0PREDICTED: transcription factor PIF4
RefseqXP_010657099.10.0PREDICTED: transcription factor PIF4
TrEMBLF6H5700.0F6H570_VITVI; Putative uncharacterized protein
STRINGVIT_12s0028g01110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.13e-54phytochrome interacting factor 3-like 6