PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019969001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Dof
Protein Properties Length: 371aa    MW: 40547.2 Da    PI: 8.0618
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019969001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.96.1e-40121181262
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                        ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss
  GSVIVT01019969001 121 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSS 181
                        7899******************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-31118178IPR003851Zinc finger, Dof-type
PfamPF027012.5E-32123179IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.975125179IPR003851Zinc finger, Dof-type
PROSITE patternPS013610127163IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MLDFKDPAIK LFGKTISLPL NPHLSPTSPP PPPLSSTTSF PDDTSQGLQP PSQDQKPLEG  60
QEFEGKEEDG TSRQTSEELK DPTASPGVSE NPETPSADKE TSKDGEQSEI SGSQEKTLKK  120
PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKNKNS  180
SASQYRHIMV SEALQTARAS AANGIHHPAL GNNGTVLNFG SDEPVVKNFQ AFSPHVPCFP  240
GASWSYPWNP AQWSSKIPPP AFCPPGFPIS FYPAPAYWGS NPGKEDHQKE NNPERGVWIP  300
KTLRIDDPNE AAKSSIWTTL GIKNDGSNGG SLLKAFQSKG DEKKRIAEMS PVLQANPAAL  360
SRSLNFHERA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.139730.0bud| cell culture| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4283920.0AM428392.2 Vitis vinifera contig VV78X017201.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269461.20.0PREDICTED: cyclic dof factor 2
SwissprotQ93ZL59e-81CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A438G7P60.0A0A438G7P6_VITVI; Cyclic dof factor 2
TrEMBLF6HPQ50.0F6HPQ5_VITVI; Uncharacterized protein
STRINGVIT_01s0026g02580.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.28e-81cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]