PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019000001
Common NameLOC100263342, VIT_04s0023g01430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 493aa    MW: 52133 Da    PI: 8.5392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019000001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056688123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  GSVIVT01019000001 66 FVCEICNKGFQRDQNLQLHRRGH 88
                       89*******************88 PP

2zf-C2H211.20.0011142164123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H + +
  GSVIVT01019000001 142 WKCDKCSKKYAVQSDWKAHSKIC 164
                        58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.44E-76588No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176688IPR015880Zinc finger, C2H2-like
PfamPF121717.8E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355220107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.44E-7137162No hitNo description
SMARTSM00355150142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MPVDLDNSSA MTVSTASGEA SVSSTGNQPA PPKPAPKKKR NLPGMPDPDA EVIALSPKTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVRKRVYVCP EPSCVHHEPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAEESAKT QTQTAVANPN SDEDPKIESP PPPPPPPPPP APAVAPSTAV  240
ISAVLPIQSP ELPENPTQIL EEAPPAATGL NASCSSSTSS SSNATGFSGL SRVMTRPDRP  300
TELTPSSSTE PISLCLSTNH GSSIFGTAGQ ERRQYAPPPQ PAMSATALLQ KAAQMGAAAT  360
NASLLRGFGI VSSTSSSGQQ ENLQWNRQQM EPESTSVAAG LGLGLPCDEG SGLKELMMGT  420
PSLFGPKQTT LDLLGLGMAA SGSPSGGLSA LITSIGGGLD VAAAAATYRG GEFAGKDMGR  480
VSIIFHLYWN FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35138210372Zinc finger protein JACKDAW
5b3h_F3e-35138210372Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.88660.0bud| cell culture| flower| fruit| inflorescence| leaf| pedicel| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4818500.0AM481850.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X181906.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271958.20.0PREDICTED: protein indeterminate-domain 2
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLF6GWY30.0F6GWY3_VITVI; Uncharacterized protein
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-163C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]