PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018161001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 258aa    MW: 28412.7 Da    PI: 9.3425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018161001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000492446123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       +kC+ C +sFs+   L  H+r+H
  GSVIVT01018161001 24 HKCKLCFRSFSNGRALGGHMRSH 46
                       79********************9 PP

2zf-C2H214.20.00013122144123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ C+k+F++   L  H  +H
  GSVIVT01018161001 122 YKCETCNKVFRSYQALGGHRASH 144
                        9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-52250No hitNo description
SMARTSM003550.0652446IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4922451IPR007087Zinc finger, C2H2
PfamPF139123.3E-62447IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
SuperFamilySSF576676.18E-8122196No hitNo description
SMARTSM003550.012122144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.762122149IPR007087Zinc finger, C2H2
PfamPF139125.6E-12122146IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SMARTSM003550.28174196IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-10174196IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369174201IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MIFVYIAWWR NACHLLLLRK MEKHKCKLCF RSFSNGRALG GHMRSHMLNL PIPPKQEQPK  60
NPKKSIRLAD PEFSFAVDAA SVQKKIKLDK LSKTESWADP EPVSSISDAT TEEDVAFSRG  120
KYKCETCNKV FRSYQALGGH RASHKKIKAC APIKEVEFEP ENASNPCLAD AKIHECPVCF  180
RKFTSGQALG GHKRSHISGS AAAAAAPAPP PPPRKASSKV GDSMIDLNLP APIEEDDISQ  240
IEHSAVSDAE FVNPIRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.23320.0fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3926650.0FQ392665.1 Vitis vinifera clone SS0AFA4YL24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278670.11e-134PREDICTED: zinc finger protein ZAT4
SwissprotQ9SHD02e-52ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLF6GV561e-133F6GV56_VITVI; Uncharacterized protein
STRINGVIT_15s0021g02720.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-52C2H2-like zinc finger protein