PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017010001
Common NameVIT_09s0002g03740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91996.4 Da    PI: 6.4673
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017010001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181472357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  GSVIVT01017010001 14 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 72
                       5679*****************************************************97 PP

2START181.35.4e-571583662205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g++
  GSVIVT01017010001 158 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTI 248
                        789*******************************************************.8888888888****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++++
  GSVIVT01017010001 249 ELLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 340
                        **********************************************9988899*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++kt++a+l+++++
  GSVIVT01017010001 341 VLRPLYESSTVLAQKTTMAALRQLRQ 366
                        **********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.418973IPR001356Homeobox domain
SMARTSM003891.2E-151177IPR001356Homeobox domain
SuperFamilySSF466895.56E-171477IPR009057Homeodomain-like
CDDcd000869.26E-171474No hitNo description
PfamPF000462.9E-161572IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181672IPR009057Homeodomain-like
CDDcd146861.14E-666105No hitNo description
PROSITE profilePS5084825.584148363IPR002913START domain
CDDcd088751.33E-80152368No hitNo description
SMARTSM002344.9E-41157367IPR002913START domain
SuperFamilySSF559612.88E-38157369No hitNo description
Gene3DG3DSA:3.30.530.203.7E-24157364IPR023393START-like domain
PfamPF018521.7E-54158366IPR002913START domain
PfamPF086705.9E-51692834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MSCKDGKGIM DNGKYVRYTP EQVEALERLY HECPKPSSIR RQQLIRECPI LSNIEPKQIK  60
VWFQNRRCRE KQRKEASRLQ AVNRKLTAMN KLLMEENDRL QKQVSQLVYE NGYFRQHTQN  120
TTLATKDTSC ESVVTSGQHH LTPQHPPRDA SPAGLLSIAE ETLTEFLSKA TGTAVEWVQM  180
PGMKPGPDSI GIVAISHGCT GVAARACGLV GLEPTRVAEI LKDRPSWFRD CRAVDVLNVL  240
PTANGGTIEL LYMQLYAPTT LAPARDFWLL RYTSVMEDGS LVVCERSLKN TQNGPSMPPV  300
QHFVRAEMLP SGYLIRPCEG GGSIIHIVDH MDLEPWSVPE VLRPLYESST VLAQKTTMAA  360
LRQLRQIAQE VSQSNVTGWG RRPAALRALS QRLSRGFNEA LNGFTDEGWS MMGNDGIDDV  420
TILVNSSPEK LTGLNLSFAN GFPAVSNAVL CAKASMLLQN VPPAILLRFL REHRSEWADN  480
NIDAYSAAAV KVGPCSLPGS RVGSFGSQVI LPLAHTIEHE EFLEVIKLEG VGHCPEDAMM  540
PRDMFLLQLC SGMDENAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SGKEASSPNR  600
TLDLASALEI GPAGNRSSND YSVNGGNTRS VMTIAFEFAF ESHLQENVAS MARQYVRSII  660
SSVQRVALAL SPSHLSSHAG LRPPLGTPEA HTLARWISHS YRCYLGVELL KSSGEGSETI  720
LKTLWHLSDA IMCCSLKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD DHGRKTLCSE  780
FPQIMQQGFA CLQGGICLSS MGRPVSYERA VAWKVLNEEE NAHCVCFMFM NWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.166400.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284003.20.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLF6HYB40.0F6HYB4_VITVI; Uncharacterized protein
STRINGVIT_09s0002g03740.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]