PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016329001
Common NameVIT_13s0019g03800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 148aa    MW: 16104.7 Da    PI: 8.4171
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016329001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.25.5e-3861147187
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +CaaCkvlrr+C ++C+lapyfp ++p kf n+hk+FGasn+ k l++lp+ +r da+ss+vyeA+ar+rdPvyG++g+i +l++ql
  GSVIVT01016329001  61 PCAACKVLRRRCDESCILAPYFPPNEPLKFINAHKVFGASNIAKALQELPQPTRADAVSSMVYEANARIRDPVYGCAGTICHLHKQL 147
                        7**********************************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.74560147IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3861147IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025242anatomyinfructescence axis
PO:0007017developmental stagesporophyte senescent stage
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MYAFCMCIQP QAPHCLLAAL RMEYADIDKT TRPLAVSCIP FSSSSPSSSR FSPPPTAFQG  60
PCAACKVLRR RCDESCILAP YFPPNEPLKF INAHKVFGAS NIAKALQELP QPTRADAVSS  120
MVYEANARIR DPVYGCAGTI CHLHKQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-36611471197LOB family transfactor Ramosa2.1
5ly0_B7e-36611471197LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4321031e-178AM432103.2 Vitis vinifera contig VV78X059104.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275051.13e-68PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR05e-43LBD1_ARATH; LOB domain-containing protein 1
TrEMBLD7TMD91e-103D7TMD9_VITVI; Uncharacterized protein
STRINGVIT_13s0019g03800.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-45LOB domain-containing protein 1