PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016097001
Common NameLOC100260401, VIT_09s0018g01650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 305aa    MW: 34512 Da    PI: 7.0094
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016097001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.7e-1544102255
                AP2   2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  GSVIVT01016097001  44 IFRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 102
                        69******************999955656446*************************98 PP

2AP251.62.4e-16145196155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  GSVIVT01016097001 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 196
                        89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1643112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-1644112IPR001471AP2/ERF domain
PfamPF008471.6E-1144102IPR001471AP2/ERF domain
PROSITE profilePS5103219.69144110IPR001471AP2/ERF domain
SMARTSM003803.7E-2644116IPR001471AP2/ERF domain
PRINTSPR003671.0E-54556IPR001471AP2/ERF domain
PfamPF008474.4E-12145196IPR001471AP2/ERF domain
CDDcd000186.23E-24145206No hitNo description
SuperFamilySSF541717.85E-18145206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-18146205IPR001471AP2/ERF domain
PROSITE profilePS5103218.334146204IPR001471AP2/ERF domain
SMARTSM003801.8E-24146210IPR001471AP2/ERF domain
PRINTSPR003671.0E-5186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAKTSQKSQK TTGNSTNNNG GSVAKVKRTR KSVPRDSPPQ RSSIFRGVTR HRWTGRYEAH  60
LWDKNCWNES QNKKGRQVYL GAYDDEEAAA HAYDLAALKY WGQETILNFP LSAYQEELKE  120
MEGQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAATAYDMA AIEYRGLNAV TNFDLSRYIN SPAPNPNPSD HELGLSFLQQ QHGSDATELP  240
LSHARSDCPL TPPDQIEMPR SSFPDDIQTY FDCQETNSYG ESDDIIFGDL KYFSSPMFQC  300
ELDT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4443272e-93AM444327.2 Vitis vinifera contig VV78X036856.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272159.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-122AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLF6HBY50.0F6HBY5_VITVI; Uncharacterized protein
STRINGVIT_09s0018g01650.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-112ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]