PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012518001
Common NameLOC100260825, VIT_03s0038g00480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 255aa    MW: 26791.9 Da    PI: 8.9998
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012518001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.5e-17167203135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cgt++  Tp++Rrgp g+++LCnaCGl+++ kg+
  GSVIVT01012518001 167 CTHCGTSSktTPMMRRGPAGPRSLCNACGLKWANKGV 203
                        *******99*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.1622863IPR010399Tify domain
SMARTSM009794.4E-112863IPR010399Tify domain
PfamPF062004.5E-123462IPR010399Tify domain
PROSITE profilePS5101713.24595137IPR010402CCT domain
PfamPF062032.4E-1695137IPR010402CCT domain
PROSITE profilePS501149.697161217IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-12161214IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-12162223No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15166208IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440167194IPR000679Zinc finger, GATA-type
PfamPF003203.5E-15167203IPR000679Zinc finger, GATA-type
CDDcd002021.35E-15167220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MNGVQDVHHN HLYVPGSDFA PVAGGGGGGG GVDQLTLSFQ GEVYVFDAVS PEKVQAVLLL  60
LGGYEVPTGI PAPGMVPPNQ RGLADFTGRS SQPQRAASLS RFREKRKERC FDKKIRYTVR  120
KEVALRMQRK KGQFTSSKAS SDEVGGGASS DWNAAHGSGQ DEPEILCTHC GTSSKTTPMM  180
RRGPAGPRSL CNACGLKWAN KGVLRDLSRV SSGVQETSLK ATQSNGDANE SGAITTVPDI  240
VSSNGDNSAV TAER*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.8690.0bud| fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3793390.0FQ379339.1 Vitis vinifera clone SS0AEB10YL18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270361.10.0PREDICTED: GATA transcription factor 24
SwissprotQ8GXL72e-78GAT24_ARATH; GATA transcription factor 24
TrEMBLF6I1U00.0F6I1U0_VITVI; Uncharacterized protein
STRINGVIT_03s0038g00480.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-83ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]