PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011895001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 386aa    MW: 43172.7 Da    PI: 8.8093
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011895001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.43e-304107199
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C++dC l+p++     p++q++++ +++k++G++ +++ll+a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++++++ 
  GSVIVT01011895001   4 SCNGCRVLRKGCSDDCSLRPCLewiktPESQANATVFLAKFYGRAGLMNLLNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWNH 95 
                        6******************************************************************************************* PP

             DUF260  88 eqlkaelallke 99 
                        +q +++++l ++
  GSVIVT01011895001  96 CQNAVDAVLGGS 107
                        ***999887655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.7283109IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-244101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCS LRPCLEWIKT PESQANATVF LAKFYGRAGL MNLLNAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWNHCQNAV DAVLGGSQIM EVPCDTAAIR  120
PILPLKAYDI RHLSKDANSP HDLHKAKTRS RFKRCGARSK PHLDSAEFCN PGWNQFSPVD  180
YNRTPSHDSS LIQQETDSMF SVETVEASLA TPPKPNQLLK SDGQTDKTEA GLELTLGFYP  240
ISRPHASFSS CCFSFILSHF LFLSPSFKSS ISLVFGCIIE TEKMDTQKYI HMLSKSFESQ  300
SMTITKSGNS IYKKYKHVVQ SISIFNLRPS PKLAFHQLLS RDVLLQTNWI STAALNQSVL  360
MGDMNEALLH SKMWFVIKYA FLLAW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.46170.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4685050.0AM468505.2 Vitis vinifera contig VV78X170020.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282602.10.0PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8863e-81LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A438ED370.0A0A438ED37_VITVI; LOB domain-containing protein 41
TrEMBLF6HEW80.0F6HEW8_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03540.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-83LOB domain-containing protein 41