PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010961001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 424aa    MW: 46742.6 Da    PI: 8.9599
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010961001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-05628123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  GSVIVT01010961001  6 FVCEICNKGFQRDQNLQLHRRGH 28
                       89*******************88 PP

2zf-C2H212.40.0004882104123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H +t+
  GSVIVT01010961001  82 WKCDKCSKKYAVQSDWKAHSKTC 104
                        58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PfamPF121716.5E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355824777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-777102No hitNo description
SMARTSM0035515082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTN EIRKRVYICP EPSCVHHNPA  60
RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALAEENNKV NQGLMANMGS NLQSQMPELI SNSSSGFNYL QDGKNGTQLS  180
GSANMSATAL LQKAAQMGAT ASNSINSPMM QKSFVSSMAA PELSSIRPSP YVTIQQQTNS  240
YDHHFQSQPD QSPLVGINGG GLPSQFLQKG PPEITPLFQT VSGSASMNND IGMFGNVFIG  300
GDQNSPFLKN MENEDSSSTS SLAQGRTVMA RSATGPSRFG GNGEGKDVTT LDLLGVGGSR  360
PVNLQEQQQR LELEAMSQHR MQAMTTFQQQ LSHGEPAIEQ GLYGIYDPIF PTQVVLTHHD  420
LMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3578141366Zinc finger protein JACKDAW
5b3h_F4e-3578141366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.58500.0fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4297060.0AM429706.1 Vitis vinifera contig VV78X144965.37, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614907.11e-180PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A1U8NUW41e-178A0A1U8NUW4_GOSHI; protein indeterminate-domain 2-like
STRINGVIT_07s0104g01620.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.23e-85C2H2 family protein