PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010284001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 491aa    MW: 53606.1 Da    PI: 9.7343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010284001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-056890123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       + C+ C+k F r  nL+ H r H
  GSVIVT01010284001 68 FICEVCNKGFQREQNLQLHRRGH 90
                       89*******************88 PP

2zf-C2H213.40.00023144166123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k++  +s+ k H +t+
  GSVIVT01010284001 144 WKCEKCSKRYAVQSDWKAHSKTC 166
                        58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-76790No hitNo description
Gene3DG3DSA:3.30.160.605.3E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.996890IPR007087Zinc finger, C2H2
SMARTSM003550.00526890IPR015880Zinc finger, C2H2-like
PfamPF121712.3E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM0035560109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.31E-7139164No hitNo description
SMARTSM00355130144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MAASSTPAQL FGIREEEQNQ VKQQHSAVPS SSNAPAAAPP KKKRNQPGTP NAEVIALSPK  60
TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKT TKEVRRKVYL CPEPGCVHHD  120
PARALGDLTG IKKHYSRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAQESA RHPTPMSTIG SHLYGSSNMG LGLSQEFHED QQSQHGGLLT  240
NKPFHGLVHL PDLQNNTNNP SSAANLFNLS FFSNSSNTNS MLSNTNNANN STNMPSSGFN  300
IIGDQISSGV PSLFSTSLQN ENAVSHMSAT ALLQKAAQMG STSSNNSASL LRGFAGSSSA  360
NAKSDRPLVG PNFGGVFGEN ESHLQDLMNS LGGGSSSIFG GGSGGLHQNL TANMGGSDRL  420
TRDFLGVGQM VRTISGGFSQ RDLPPPVIQE EITRKKKQLQ VQELWLFHGN AFFLFLWSRT  480
LWMDDDVLTC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35140201364Zinc finger protein JACKDAW
5b3h_F3e-35140201364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.34650.0flower| fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4866390.0AM486639.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X099428.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268279.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic isoform X1
SwissprotQ8GYC11e-138IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLF6HG270.0F6HG27_VITVI; Uncharacterized protein
STRINGVIT_01s0010g02100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-116indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]