PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010152001
Common NameLOC100258132, VIT_01s0010g00930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 196aa    MW: 22353.9 Da    PI: 6.5103
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010152001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.12.5e-1581138562
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ ++  +++ +e
  GSVIVT01010152001  81 RKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRNENHSLIDKLNHVSECHDRVLQE 138
                        79********************************************999877666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-1677141IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.66879130IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.9E-1381154No hitNo description
PfamPF001707.3E-1381138IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.0E-1381130No hitNo description
CDDcd147023.42E-2182133No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MLPGEFTGIH YMAPENPTPF PANFGMTYDN TPTLHFGGYL SNLTTSQIPP IHEFTPQSSS  60
LSNNSTSDEA EEHQLSIIDE RKQRRMISNR ESARRSRMRK QKHLDELWSQ VVRLRNENHS  120
LIDKLNHVSE CHDRVLQENV RLKEEASDLR QMLTDLRIGS PYTTLRELEG VSCNTAHLRA  180
ESSNQSITSS IDLLH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4575810.0AM457581.2 Vitis vinifera contig VV78X004271.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269495.11e-144PREDICTED: basic leucine zipper 43
SwissprotQ9FMC26e-40BZP43_ARATH; Basic leucine zipper 43
TrEMBLD7TAA51e-142D7TAA5_VITVI; Uncharacterized protein
STRINGVIT_01s0010g00930.t011e-143(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.16e-45basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]