PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009892001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 413aa    MW: 46866.8 Da    PI: 8.1503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009892001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-053052223
                       EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                        C+ Cg++F+  ++L+ H+ + H
  GSVIVT01009892001 30 ACSECGEVFPKTESLELHQAVrH 52
                       6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.3492957IPR007087Zinc finger, C2H2
PROSITE patternPS0002802952IPR007087Zinc finger, C2H2
SuperFamilySSF563992.47E-954167No hitNo description
Gene3DG3DSA:3.90.228.106.2E-556167IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MQFRKLSGCY ECHMIVDPNR YPSPRTTICA CSECGEVFPK TESLELHQAV RHAVSELGPE  60
DSGRNIVEII FKSSWLKKDN PICKIERILK VHNTQRTIQR FEECRDAVKV RANNNTKKNP  120
RCAADGNELL RFHCTTLTCA LGSRGSSSLC GSVPGCGVCT IIRHGFQGKA EIEVEKYFRE  180
EFEEESCKVR RKDVQGLIEV ENPNWGKLDI FKIRDIYIEK TTQLFRREKN EIDKQKRHEQ  240
GIKLHELHRF LLILSHNLCI LEATMKRKSC SPCDSLESFF DDNELEVSEI LIQIPLIIFQ  300
AENRNRLLVP WGVRKRRSAI DPELYPPSVP SSSSPHLPGT CVGPTCDDDD PQAKVEPSSP  360
ATPLSFSPSE TDGKSKRSKK SVSSKKKKEN LLKMVEDLTH QKESLMTVSL LI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4309490.0AM430949.2 Vitis vinifera contig VV78X241438.7, whole genome shotgun sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-90C2H2-like zinc finger protein