PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009723001
Common NameLOC100248845, VIT_18s0001g12610
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 103aa    MW: 11453.8 Da    PI: 8.4733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009723001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-101558344
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       +WT+   +l+ +a +++ ++   +W+ Ia+ +g g++++++k ++
  GSVIVT01009723001 15 SWTQKQNKLFEEALALYDKNtpdRWANIAKAVG-GKSAEEVKRHY 58
                       7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6711165IPR017884SANT domain
SMARTSM007171.0E-81264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-51459IPR009057Homeodomain-like
SuperFamilySSF466892.92E-131470IPR009057Homeodomain-like
PfamPF002494.2E-81558IPR001005SANT/Myb domain
CDDcd001672.00E-71658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MASHAFSSSC YSSSSWTQKQ NKLFEEALAL YDKNTPDRWA NIAKAVGGKS AEEVKRHYEI  60
LEQDVMHIEN GQVPLPIYRS TGSSSGGSVD EQRHLLKNLK LR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-336102193RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.96431e-175leaf