PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009716001
Common NameLOC100255743, VIT_18s0001g12530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 92aa    MW: 10457.6 Da    PI: 7.6769
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009716001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09652246
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                       ++WTt   +l+ +a  ++ ++   +W   ar +g g+t +++k ++ +
  GSVIVT01009716001  6 NNWTTKQNKLFENALVMYDKDtpdRWQNMARAVG-GKTVEEVKRHYEM 52
                       69********************************.***********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.992358IPR017884SANT domain
SMARTSM007171.9E-7456IPR001005SANT/Myb domain
PfamPF002493.2E-6653IPR001005SANT/Myb domain
SuperFamilySSF466897.1E-13761IPR009057Homeodomain-like
CDDcd001675.45E-6754No hitNo description
Gene3DG3DSA:1.10.10.601.8E-5760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MGSSSNNWTT KQNKLFENAL VMYDKDTPDR WQNMARAVGG KTVEEVKRHY EMLVEDVKHI  60
ESGQVPLPNY RKAGASNKGY SFNDEEQRAS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-32478781RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.56521e-146fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4644321e-146AM464432.2 Vitis vinifera contig VV78X179323.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282461.18e-64PREDICTED: protein RADIALIS-like 3 isoform X2
SwissprotQ1A1732e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A438K2652e-62A0A438K265_VITVI; Protein RADIALIS-like 6
TrEMBLE0CQD32e-62E0CQD3_VITVI; Uncharacterized protein
STRINGVIT_18s0001g12530.t013e-63(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.15e-36RAD-like 6