PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009680001
Common NameVIT_18s0001g12220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 497aa    MW: 51862.5 Da    PI: 9.5058
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009680001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055779123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  GSVIVT01009680001 57 FVCEICNKGFQRDQNLQLHRRGH 79
                       89*******************88 PP

2zf-C2H2140.00015133155123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC+ C+k +  +s+ k H++t+
  GSVIVT01009680001 133 WKCERCSKKYAVQSDWKAHLKTC 155
                        58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.4E-75679No hitNo description
PROSITE profilePS5015710.9495779IPR007087Zinc finger, C2H2
PfamPF121717.9E-55779IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035521098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.4E-7128153No hitNo description
SMARTSM00355130133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MTVSTASREA SVTSSGNQTA PQPVAPTKKK RNLPGTPDPD AEVIALSPKT LMATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS KEVRKRVYVC PEPTCVHHDP TRALGDLTGI  120
KKHFCRKHGE KKWKCERCSK KYAVQSDWKA HLKTCGTREY KCDCGTLFSR RDSFITHRAF  180
CDALAQESAR AQVLPSTNTE ENPEIETAVS SSPTALSPST TVLSIQSPGA DMTENPVGVL  240
QQAPATISLT TGTVTSSSSS STSVFASIFA PSTTPVTSQP PQSSSTFSDL ICAMGRSKRS  300
TTLPSSSTAE PTLRLSSSLY LSNSASSLFP TPDQNHRHYA PSPQPAMSAT ALLQKAAQMG  360
AAASNASLLR GLGLAMSPSS SAQQDSSTTQ WSGHVKADSN PVGAGLGLGL PSEGGPALTG  420
LMMSPSSLFV NKPTTLDLLG LGMVPGGAST AGLSALLTSI SGGGLDIAAA GSPFGGAAAA  480
TAEAAPDRKP NGPALL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35129198372Zinc finger protein JACKDAW
5b3h_F1e-35129198372Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.224940.0bud| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4474350.0AM447435.2 Vitis vinifera contig VV78X087181.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281605.10.0PREDICTED: protein indeterminate-domain 2 isoform X1
SwissprotQ9LVQ71e-152IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLE0CQ240.0E0CQ24_VITVI; Uncharacterized protein
STRINGVIT_18s0001g12220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-122C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]