PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009665001
Common NameLOC100250676, VIT_18s0001g12120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 399aa    MW: 42181.2 Da    PI: 6.1892
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009665001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_176.24.3e-24272334163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL+ kv+ L++eN+ L++el +l ++++kl+se+
  GSVIVT01009665001 272 ERELKRQRRKQSNRESARRSRLRKQAECEELQSKVEILSNENHVLREELHRLAEQCEKLTSEN 334
                        89***********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.8E-30194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.3E-9119233No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-19266331No hitNo description
SMARTSM003381.2E-21272336IPR004827Basic-leucine zipper domain
PfamPF001701.5E-21272334IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.139274337IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-11275331No hitNo description
CDDcd147021.99E-24277327No hitNo description
PROSITE patternPS000360279294IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGDGEESTPP KSSKPPASTQ ETPSTPSYPD WSTSMQAYYG AGATPPPFFP SPVAPPSPHP  60
YLWGGQHPMM PPYGTPLPYP ALYPRGALYA HPSMATAQGV ALTNTDMEVK TPDGKDPASI  120
KKSKAASGNM GLISGKSGES GKAASVSGND GASQSGESGS EASSDATDEN ANQASSAVKK  180
RSFNLADGSN AKGNSAAQYT GGNHSASVPG KPVVPMPTTS LNIGMDLWNA SPAGGTPMKT  240
RPQSSGASPQ VASATIVGRE GMLQDHQWIQ DERELKRQRR KQSNRESARR SRLRKQAECE  300
ELQSKVEILS NENHVLREEL HRLAEQCEKL TSENNSIMEE LTQLYGPEAT SSLQDNNHNL  360
VLHPINGEDD GHVQDASPLN NSSSTSDQNG KFSSNGKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288294RRSRLRK
2288295RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.98770.0fruit| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3804150.0FQ380415.1 Vitis vinifera clone SS0ACG61YO10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283244.10.0PREDICTED: G-box-binding factor 1
RefseqXP_010664662.10.0PREDICTED: G-box-binding factor 1
RefseqXP_019072177.10.0PREDICTED: G-box-binding factor 1
SwissprotP427741e-104GBF1_ARATH; G-box-binding factor 1
TrEMBLE0CQ140.0E0CQ14_VITVI; Uncharacterized protein
STRINGVIT_18s0001g12120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.22e-74G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]