PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009467001
Common NameLOC100245419, VIT_18s0001g10270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 370aa    MW: 39666 Da    PI: 6.5099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009467001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.8e-16191237455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  GSVIVT01009467001 191 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 237
                        6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.5E-20184247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-20184247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.66E-18190241No hitNo description
PfamPF000102.3E-13191237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MADLYGTNVS SSATALALES EDISAFLHHF LHNQSSSSTT TSTIKAKHAH SFSPALLHPE  60
TASAAEVLSP QKDRRRFSRS AILSDSDCRV RSGLSTAGSS AVVESSTGIN FSDHGAYCPA  120
GMKETAGNTF SSIAAVDSEA ITVSRKRRMF SMENSVDDFG CDSEKGPEAS DVPSNPAPSR  180
SSSKRSRAAE VHNLSEKRRR SRINEKMKAL QNLIPNSNKT DKASMLDEAI EYLKQLQLQV  240
QMLTMRNGLS LHPIYLPGAL QPTQLPQTGA GFAEGNLLLS NSGTGTLPAN QEISMQTTFD  300
LTSQPIAIPT MTNMNNSDTS FGFEHSDQPH YGPFNLTGSS KEICHEEALP EPQGEMNCSR  360
KNSSSGVSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148SRKRRM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.254660.0inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4627880.0AM462788.2 Vitis vinifera contig VV78X037236.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284880.10.0PREDICTED: transcription factor SPATULA isoform X1
SwissprotQ9FUA42e-47SPT_ARATH; Transcription factor SPATULA
TrEMBLE0CPT40.0E0CPT4_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g10270.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-46bHLH family protein