PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009198001
Common NameVIT_18s0001g07730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 325aa    MW: 35449.6 Da    PI: 4.9352
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009198001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16163199135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  GSVIVT01009198001 163 CQHCGVSEnsTPAMRRGPAGPRTLCNACGLMWANKGT 199
                        **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.6092358IPR010399Tify domain
SMARTSM009796.0E-62358IPR010399Tify domain
PfamPF062003.4E-92657IPR010399Tify domain
PROSITE profilePS5101712.6591133IPR010402CCT domain
PfamPF062038.7E-1591132IPR010402CCT domain
PROSITE profilePS501148.629157205IPR000679Zinc finger, GATA-type
SMARTSM004018.3E-9157210IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-11158207No hitNo description
Gene3DG3DSA:3.30.50.106.7E-15161204IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.79E-16162206No hitNo description
PfamPF003203.9E-14163199IPR000679Zinc finger, GATA-type
PROSITE patternPS003440163190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDDVDDDPHI NSINPIDHAG VVVASRTSEL TLAFEGEVYV FPAVTPEKVQ AVLLLLGGRD  60
IPTGVPTIEV PFDQSNRGVG DLPKRSNLSR RIASLVRFRE KRKERCFDKK IRYTVRKEVA  120
QRMHRKNGQF ASLKESSGPS NWDSAQSLQG DTTPRPETVL RRCQHCGVSE NSTPAMRRGP  180
AGPRTLCNAC GLMWANKGTL RDLSKGGRNL SLDQIELGTP IDVKPSIMEG ENFSGSQDEH  240
ITPEDPSKAV AERTDNPSVN ADEEVMSSGV YPSSFTDLHE TADDLSHTLP MGIVHSSGNL  300
DDQETLVELA NASETEMDIP GQTC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.117780.0bud| fruit| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4705054e-76AM470505.2 Vitis vinifera contig VV78X077841.20, whole genome shotgun sequence.
GenBankAM4886714e-76AM488671.2 Vitis vinifera contig VV78X090115.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664424.10.0PREDICTED: GATA transcription factor 24 isoform X1
SwissprotQ8GXL74e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLF6H1470.0F6H147_VITVI; Uncharacterized protein
STRINGVIT_18s0001g07730.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]