PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01005087001
Common NameVIT_07s0255g00080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 172aa    MW: 19354.3 Da    PI: 9.8175
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01005087001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-1975168198
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        ffk+ ++s +l sg l++pk+f ++h +g+   s++ +    s r W vkl    ++ +  vlt+GW +Fvk+n L+egD++vF++ g+++ 
  GSVIVT01005087001  75 FFKIVMQSTYLHSGYLRIPKQFSSTHiKGS---SRKAM-LWASDRFWPVKL--LVYPLWsSVLTTGWVDFVKENALREGDVCVFEMYGSNDV 160
                        99*********************9995433...44455.56799*******..666666679***********************8888888 PP

                        ..EEEEE- CS
                 B3  91 elvvkvfr 98 
                         l+v++fr
  GSVIVT01005087001 161 VLKVTFFR 168
                        88998886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-2270168IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2072169IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-1975168No hitNo description
PfamPF023622.5E-1675168IPR003340B3 DNA binding domain
PROSITE profilePS5086313.63475170IPR003340B3 DNA binding domain
SMARTSM010194.0E-1375170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDNDSDSSSG GDELKTKEDQ LHQGNERKCK LKQPVEETIA GVRFSQGTPC LGRLSNKVKA  60
RALKAASKFV SNYPFFKIVM QSTYLHSGYL RIPKQFSSTH IKGSSRKAML WASDRFWPVK  120
LLVYPLWSSV LTTGWVDFVK ENALREGDVC VFEMYGSNDV VLKVTFFRCL A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-205916832141B3 domain-containing transcription factor VRN1
4i1k_B8e-205916832141B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.152120.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4452161e-135AM445216.2 Vitis vinifera contig VV78X011820.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019076488.11e-109PREDICTED: B3 domain-containing protein Os01g0723500 isoform X2
TrEMBLD7UE111e-125D7UE11_VITVI; Uncharacterized protein
STRINGVIT_07s0255g00080.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20511436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-20related to vernalization1 1