PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01004404001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 173aa    MW: 19552.2 Da    PI: 10.3701
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01004404001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.2e-11555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT eE+  l+ +v ++G g W+tI            R+  ++k++w++
  GSVIVT01004404001  5 KQKWTSEEEAALKAGVIKHGAGKWRTILMDPEfstilHLRSNVDLKDKWRN 55
                       79***********************************88***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.629161IPR017930Myb domain
SuperFamilySSF466897.8E-15259IPR009057Homeodomain-like
SMARTSM007172.7E-6459IPR001005SANT/Myb domain
PfamPF002492.8E-7556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-12556IPR009057Homeodomain-like
CDDcd116602.99E-18657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV IKHGAGKWRT ILMDPEFSTI LHLRSNVDLK DKWRNMNVMA  60
SGLGSRHRAK LALKNQTTPK HHEEAMALST VVQSGEEILD AKPLXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXVFPWS GG*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3818241e-174FQ381824.1 Vitis vinifera clone SS0ABG82YJ21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010645306.11e-69PREDICTED: telomere repeat-binding factor 1 isoform X2
RefseqXP_019073112.11e-69PREDICTED: telomere repeat-binding factor 1 isoform X2
RefseqXP_019073113.11e-69PREDICTED: telomere repeat-binding factor 1 isoform X2
SwissprotQ8VWK46e-42TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLD7U6U93e-68D7U6U9_VITVI; Uncharacterized protein
STRINGVIT_07s0151g00480.t015e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-44telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]