PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003547001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 142aa    MW: 15563.8 Da    PI: 8.3323
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003547001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.59.6e-38788182
             DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82
                       +CaaCk++rrkC+++C++apyfp +qp+kfanvhk+FGasnv kll++++  +reda++sl+yeAear++dPvyG+v+ i+ 
  GSVIVT01003547001  7 PCAACKLQRRKCTQECIYAPYFPPDQPHKFANVHKVFGASNVAKLLNEINVAHREDAVNSLAYEAEARLHDPVYGCVNSITL 88
                       7****************************************************************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.9886107IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-38789IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSSSNSPCAA CKLQRRKCTQ ECIYAPYFPP DQPHKFANVH KVFGASNVAK LLNEINVAHR  60
EDAVNSLAYE AEARLHDPVY GCVNSITLTS SKSITISFSP SCCFRPKHSN AAMLSCTGFW  120
VIQNSTCDLR ILKVTLIHAD N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-40392796LOB family transfactor Ramosa2.1
5ly0_B2e-40392796LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.294743e-93cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}.
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4846351e-136AM484635.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X152740.2, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263136.32e-57PREDICTED: LOB domain-containing protein 36
SwissprotQ9FKZ33e-44LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A438FB105e-56A0A438FB10_VITVI; LOB domain-containing protein 36
TrEMBLA0A438KQT84e-56A0A438KQT8_VITVI; LOB domain-containing protein 36
TrEMBLF6H7Q94e-56F6H7Q9_VITVI; Uncharacterized protein
STRINGVIT_07s0197g00030.t016e-57(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-45ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]