PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003250001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 158aa    MW: 18329.7 Da    PI: 9.1887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003250001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-113275151
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                       +  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  GSVIVT01003250001 32 CVMRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 75
                       568***99..47*********4.....5********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-63276IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-83378IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-63584IPR001471AP2/ERF domain
SMARTSM003805.2E-43592IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MVFARQIFIF VGQEIKRRKR HRRKHFQDQE PCVMRGVYFK NMKWQAAIKV DKKQIHLGTV  60
GSQEEAAHLY DRAAFMCGRE PNFELPEEEK DELRQFKWEE FLAMTRHAIT NKKHKRRLGA  120
GLQKHSEPPQ QNSDVEGEQG TNGFSASEDV EPDTSAS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3931480.0FQ393148.1 Vitis vinifera clone SS0AFA2YG23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635007.31e-107PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-45ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA5BWR31e-106A5BWR3_VITVI; Uncharacterized protein
STRINGVIT_00s0184g00010.t011e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP80221215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.21e-47ERF family protein