PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003156001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 294aa    MW: 32484.9 Da    PI: 8.4589
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003156001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-104386140
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqc 40
                       +g+W+++Ed+ l ++vk++G ++W++I+r        +Rt++++
  GSVIVT01003156001 43 KGPWSPQEDQALQCLVKRYGARNWSLISRWSTdhsrRRRTGESL 86
                       79*************************99666555566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.1983890IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-93984IPR009057Homeodomain-like
SuperFamilySSF466891.27E-84086IPR009057Homeodomain-like
PfamPF002494.0E-84371IPR001005SANT/Myb domain
CDDcd001672.72E-74587No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGFRFVSSKL GTEWVTAMCK RAVGGLEPDS TMEALQNEAD RVKGPWSPQE DQALQCLVKR  60
YGARNWSLIS RWSTDHSRRR RTGESLKPTQ STEISGRRSR GCSMARQSSG GGPSMPATGL  120
CLSPGSPTGS DVSDTGFPVV SSPNLYRPVA RTGAVQVPPQ QFEPSSKKDD PPTALTLSLP  180
GTETYENEYE SPPLDSAPRH NKLASPEKQP ALTFAMPENP EPMTFGSDFF LMIQDMIKTE  240
VKNYMSGLEI NEICSQKSYL LTRTAFFLLF KQLFTQLITT YKTILLSFIF PNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.228370.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4585540.0AM458554.2 Vitis vinifera contig VV78X208287.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285389.11e-123PREDICTED: transcription factor MYB44
TrEMBLA0A438FN841e-121A0A438FN84_VITVI; Transcription factor MYB44
TrEMBLF6I5X91e-121F6I5X9_VITVI; Uncharacterized protein
STRINGVIT_03s0180g00210.t011e-122(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-24myb domain protein r1