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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01003156001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB_related | ||||||||
Protein Properties | Length: 294aa MW: 32484.9 Da PI: 8.4589 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.6 | 3.9e-10 | 43 | 86 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqc 40 +g+W+++Ed+ l ++vk++G ++W++I+r +Rt++++ GSVIVT01003156001 43 KGPWSPQEDQALQCLVKRYGARNWSLISRWSTdhsrRRRTGESL 86 79*************************99666555566666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.198 | 38 | 90 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-9 | 39 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.27E-8 | 40 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-8 | 43 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.72E-7 | 45 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGFRFVSSKL GTEWVTAMCK RAVGGLEPDS TMEALQNEAD RVKGPWSPQE DQALQCLVKR 60 YGARNWSLIS RWSTDHSRRR RTGESLKPTQ STEISGRRSR GCSMARQSSG GGPSMPATGL 120 CLSPGSPTGS DVSDTGFPVV SSPNLYRPVA RTGAVQVPPQ QFEPSSKKDD PPTALTLSLP 180 GTETYENEYE SPPLDSAPRH NKLASPEKQP ALTFAMPENP EPMTFGSDFF LMIQDMIKTE 240 VKNYMSGLEI NEICSQKSYL LTRTAFFLLF KQLFTQLITT YKTILLSFIF PNF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.22837 | 0.0 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM458554 | 0.0 | AM458554.2 Vitis vinifera contig VV78X208287.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002285389.1 | 1e-123 | PREDICTED: transcription factor MYB44 | ||||
TrEMBL | A0A438FN84 | 1e-121 | A0A438FN84_VITVI; Transcription factor MYB44 | ||||
TrEMBL | F6I5X9 | 1e-121 | F6I5X9_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0180g00210.t01 | 1e-122 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-24 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01003156001 |