PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01002536001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 476aa    MW: 52335.9 Da    PI: 7.4461
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01002536001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.7e-16355406155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  GSVIVT01002536001 355 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 406
                        57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.99E-15209322No hitNo description
PROSITE profilePS5103215.962210320IPR001471AP2/ERF domain
SMARTSM003801.2E-19210326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-12210232IPR001471AP2/ERF domain
PRINTSPR003675.1E-6211222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-12284321IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-9288322IPR016177DNA-binding domain
PRINTSPR003675.1E-6302322IPR001471AP2/ERF domain
PfamPF008474.0E-10355406IPR001471AP2/ERF domain
CDDcd000181.60E-11355414No hitNo description
SuperFamilySSF541718.5E-18355415IPR016177DNA-binding domain
SMARTSM003801.6E-31356420IPR001471AP2/ERF domain
PROSITE profilePS5103219.151356414IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18356414IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MKPLSAPQSN PNSHTLTRLF AGWTNPKPQV MYTEGDDYQV KEAATPSITN SSMLTSFVDP  60
QLHHQQVPKL EDFLGGDSSS LVRYSESQTE TQDSSLTHIY DHGSAYFNEQ QDLKAIAATA  120
GFQAFSTNSG SEVEDSSSIG RTQLASSDFP GHSIESGNEL AFSHCPTGAL SLGVTTTTTT  180
TQRSDQQAIV SADSECSKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN SSRREGQARK  240
GRQATQTCLR MGFSTLYFSH ILRKGINYLP GDESDKNHVA YGSFLFALYL GGYDKEEKAA  300
RAYDLAALKY WGASATTNFP VSNYTKELEE MKHVTKQEFI ASLRRKSSGF SRGASIYRGV  360
TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDIA AIKFRGVNAV TNFEMNRYDV  420
EAIANSALPI GGAAKRLKLS LESDQKPCLN LDQQTQSSAS SSGITFGAIQ PIPAIP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.49020.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4597760.0AM459776.1 Vitis vinifera, whole genome shotgun sequence, contig VV79X002248.2, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635541.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-165AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A438KQZ70.0A0A438KQZ7_VITVI; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLF6HRZ00.0F6HRZ0_VITVI; Uncharacterized protein
STRINGVIT_00s1291g00010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.31e-168AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]