PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01002384001
Common NameVIT_07s0151g00480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 123aa    MW: 13599.8 Da    PI: 10.8444
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01002384001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11556147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                       +++WT eE+  l+ +v ++G g W+tI            R+  ++k++w++ 
  GSVIVT01002384001  5 KQKWTSEEEAALKAGVIKHGAGKWRTILMDPEfstilHLRSNVDLKDKWRNM 56
                       79***********************************88***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.629161IPR017930Myb domain
SuperFamilySSF466892.66E-15259IPR009057Homeodomain-like
SMARTSM007172.7E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-13456IPR009057Homeodomain-like
PfamPF002491.4E-7556IPR001005SANT/Myb domain
CDDcd116606.84E-19657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV IKHGAGKWRT ILMDPEFSTI LHLRSNVDLK DKWRNMNVMA  60
SGLGSRHRAK LALKNQTTPK HHEEAMALST VVQSGEEILD AKPLAISRGP LRIDGPKKGI  120
TRL
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3818240.0FQ381824.1 Vitis vinifera clone SS0ABG82YJ21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010645306.16e-86PREDICTED: telomere repeat-binding factor 1 isoform X2
RefseqXP_019073112.16e-86PREDICTED: telomere repeat-binding factor 1 isoform X2
RefseqXP_019073113.16e-86PREDICTED: telomere repeat-binding factor 1 isoform X2
SwissprotQ8VWK42e-43TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLD7U6U93e-84D7U6U9_VITVI; Uncharacterized protein
STRINGVIT_07s0151g00480.t016e-85(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-46telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]